Sample: MMETSP0196C


Sample Name MMETSP0196C 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Alexandrium fundyense CCMP1719 (combined sample which includes MMETSP0196 and MMETSP0197)

Sample Accession CAM_SMPL_002463
Assembly  
Combined Assembly Alexandrium-fundyense-CCMP1719
Taxon ID 2932

Ph 8  
Phosphate 36.2  
Nitrate 882  
Axenic No  
Trace elements 11.7  
Experimental salinity 28  

Growth medium f/2 amended seawater  

NCBI SRA SRS616845  

Habitat name marine habitat  
Habitat marine habitat  

Site name Atlantic Ocean  
Latitude 43.1  
Longitude -70.782  
Longitude 70.782  
Site description Portsmouth, New Hampshire  
Country UNITED STATES  
Country US  
Sample collection site Atlantic Ocean  
Other collection site info Portsmouth, New Hampshire  

Project id 104  
Clonal 1  
Date of experiment 15-MAY-11  
External sample id AlefuSL1  
Investigation type EU  
Principle investigator Senjie Lin  
Primary citation Erdner, D. L., and D. M. Anderson. 2006. Global transcriptional profiling of the toxic dinoflagellate Alexandrium fundyense using massively parallel signature sequencing. BMC Genomics 7:88.  
Other experimental metadata available submitted is dinoflagellate spliced leader based cDNA prepared for culture enriched in G1 phase.  

GenBank BioSample 2740432  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP019/MMETSP0196.fastq.tar  

Day portion of day night cycle in hours 14  
Light 200  
Experimental temperature 15  
Night portion of day night cycle in hours 10  

Library acc CAM_LIB_001229  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000281  
Combined assembly name Alexandrium-fundyense-CCMP1719  
Pcr amp 1  

Source mat id (MMETSP0196) Alexandrium fundyense  
Source mat id CAM_BM_002483  
Source mat id CAM_SMPL_002463  
Sample type eukaryotes  
Sample description Alexandrium fundyense CCMP1719 (combined sample which includes MMETSP0196 and MMETSP0197)  
Sample name MMETSP0196C  
Taxon id 2932  

Strain CCMP1719  
Genus Alexandrium  
Species fundyense  
Family Goniodomataceae  
Order Gonyaulacales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta  

N/A