Sample: MMETSP0202


Sample Name MMETSP0202 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Karenia brevis Wilson

Sample Accession CAM_SMPL_002457
Assembly  
Combined Assembly Karenia-brevis-Wilson
Taxon ID 156230

Ph 8.3  
Phosphate 36  
Nitrate 883  
Axenic No  
Trace elements 25  
Experimental salinity 36  

Growth medium f/2 amended seawater  

NCBI SRA SRS618860  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  
Habitat description coastal harmful algal bloom  

Site name Gulf of Mexico  
Site description St. Johns Pass, FL  
Country UNITED STATES  
Country US  
Sample collection site Gulf of Mexico  
Other collection site info St. Johns Pass, FL  

Project id 104  
Collection start time 1953-01-01 00:00:00.0  
Collection stop time 1953-01-01 00:00:00.0  
Clonal Unknown  
Collection date 01-JAN-53  
Date of experiment 07-APR-08  
External sample id K. brevis Wilson stationary  
Investigation type EU  
Principle investigator Frances Van Dolah  
Additional citations Morey, J.S., Monroe, E.A., Kinney, A.L., Beal, M., Johnson, J.G., Hitchcock, G.L., Van Dolah, F.M. 2011. Transcriptomic response of the Florida red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition. BMC Genomics (in p  
Additional citations Morey, J.S., Monroe, E.A., Kinney, A.L., Beal, M., Johnson, J.G., Hitchcock, G.L., Van Dolah, F.M. 2011. Transcriptomic response of the Florida red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition. BMC Genomics (in pr  
Primary citation Daugbjerg, N., Hansen, G., Larson, J., Moestrup, O. 2000. Phylogeny of some of the major genera of dinoflagellates based on ultrastructure and partial LSU rDNA sequence data, including the erection of three new genera of unarmored dinoflagellates. Phycol  
Primary citation Daugbjerg, N., Hansen, G., Larson, J., Moestrup, O. 2000. Phylogeny of some of the major genera of dinoflagellates based on ultrastructure and partial LSU rDNA sequence data, including the erection of three new genera of unarmored dinoflagellates. Phycolo  
Other experimental metadata available mid-stationary phase, division rate 0 div./day  

GenBank BioSample 2739955  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP020/MMETSP0202.fastq.tar  

Day portion of day night cycle in hours 16  
Light 50  
Experimental temperature 25  
Night portion of day night cycle in hours 8  

Library acc CAM_LIB_001223  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000275  
Combined assembly name Karenia-brevis-Wilson  
Pcr amp No  

Source mat id (MMETSP0202) Karenia brevis  
Source mat id CAM_BM_002477  
Source mat id CAM_SMPL_002457  
Sample type eukaryotes  
Sample description Karenia brevis Wilson  
Sample name MMETSP0202  
Taxon id 156230  

Strain Wilson  
Genus Karenia  
Species brevis  
Family Gymnodiniaceae  
Order Gymnodiniales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta