Sample: MMETSP0176


Sample Name MMETSP0176 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Proboscia alata PI-D3

Sample Accession CAM_SMPL_002452
Assembly  
Combined Assembly Proboscia-alata-PI_D3
Taxon ID 216777

Ph 8.15  
Phosphate 28.45  
Nitrate 28  
Silicate 60  
Ammonium 0.09  
Axenic No  
Trace elements 7.3  
Experimental salinity 33.6  

Longhurst province ANTA  

Growth medium modified f/2 amended seawater  
Modifications to growth medium Using trace metal solution after Morel et al. 1979. medium set up using trace metal clean conditions and procedures.  
Other environmental metadata available further metadata available at http://www.pangaea.de  

NCBI SRA SRS619043  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Site name Southern_Ocean  
Latitude -64.0038  
Longitude -0.0025  
Site description expedition ANT-XXIV / 2  
Sample collection site Southern_Ocean  
Other collection site info expedition ANT-XXIV / 2  

Project id 104  
Collection start time 2008-01-20 00:00:00.0  
Collection stop time 2008-01-20 00:00:00.0  
Clonal 1  
Collection date 20-JAN-08  
External sample id P. alata Fe- 1  
Investigation type EU  
Principle investigator Bank Beszteri  
Primary citation (Brightwell) Sundström 1986: 99, figs 258-266  

GenBank BioSample 2740271  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP017/MMETSP0176.fastq.tar  

Day portion of day night cycle in hours 16  
Light 35  
Experimental temperature 3  
Night portion of day night cycle in hours 8  

Library acc CAM_LIB_001218  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000270  
Combined assembly name Proboscia-alata-PI_D3  
Pcr amp No  

Source mat id (MMETSP0176) Proboscia alata - seawater  
Source mat id CAM_BM_002472  
Source mat id CAM_SMPL_002452  
Sample type eukaryotes  
Sample description Proboscia alata PI-D3  
Sample name MMETSP0176  
Taxon id 216777  
Sample material seawater  

Strain PI-D3  
Genus Proboscia  
Species alata  
Family Rhizosoleniaceae  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A