Sample: MMETSP0152


Sample Name MMETSP0152 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Thalassiothrix antarctica L6-D1

Sample Accession CAM_SMPL_002440
Assembly  
Combined Assembly Thalassiothrix-antarctica-L6_D1
Taxon ID 1049557

Ph 8.15  
Phosphate 28.45  
Nitrate 28  
Silicate 60  
Ammonium 0.09  
Iron 11000  
Axenic No  
Trace elements 7.3  
Experimental salinity 33.6  

Longhurst province SANT  

Growth medium modified f/2 amended seawater  
Modifications to growth medium Using trace metal solution after Morel et al. 1979. medium set up using trace metal clean conditions and procedures.  
Other environmental metadata available further metadata available at http://www.pangaea.de  

NCBI SRA SRS619039  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Site name Southern_Ocean  
Latitude -51.83333  
Longitude -28.66667  
Site description expedition LOHAFEX  
Sample collection site Southern_Ocean  
Other collection site info expedition LOHAFEX  

Project id 104  
Collection start time 2009-01-20 00:00:00.0  
Collection stop time 2009-01-20 00:00:00.0  
Clonal 1  
Collection date 20-JAN-09  
Date of experiment 24-JUN-11  
External sample id T. antarctica CTR 1  
Investigation type EU  
Principle investigator Bank Beszteri  
Primary citation A.Schimper ex G.Karsten 1905: 124, pl. 17: fig. 12  

GenBank BioSample 2740290  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP015/MMETSP0152.fastq.tar  

Day portion of day night cycle in hours 16  
Light 35  
Experimental temperature 3  
Night portion of day night cycle in hours 8  

Library acc CAM_LIB_001206  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000258  
Combined assembly name Thalassiothrix-antarctica-L6_D1  
Pcr amp No  

Source mat id (MMETSP0152) Thalassiothrix antarctica - seawater  
Source mat id CAM_BM_002460  
Source mat id CAM_SMPL_002440  
Sample type eukaryotes  
Sample description Thalassiothrix antarctica L6-D1  
Sample name MMETSP0152  
Taxon id 1049557  
Sample material seawater  

Strain L6-D1  
Genus Thalassiothrix  
Species antarctica  
Family Thalassionemataceae  
Order Thalassionemales  
Superkingdom Eukaryota  
Class Fragilariophyceae  
Phylum Bacillariophyta  

N/A