Sample: MMETSP0156


Sample Name MMETSP0156 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Thalassionema nitzschioides L26-B

Sample Accession CAM_SMPL_002428
Assembly  
Combined Assembly Thalassionema-nitzschioides-L26_B
Taxon ID 33649

Ph 8.15  
Phosphate 28.45  
Nitrate 28  
Silicate 60  
Ammonium 0.09  
Iron 11000  
Axenic No  
Trace elements 7.3  
Experimental salinity 33.6  

Longhurst province SANT  

Growth medium modified f/2 amended seawater  
Modifications to growth medium Using trace metal solution after Morel et al. 1979. medium set up using trace metal clean conditions and procedures.  
Other environmental metadata available further metadata available at http://www.pangaea.de  

NCBI SRA SRS619037  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Site name Southern_Ocean  
Latitude -47.86667  
Longitude -15.8  
Site description LOHAFEX station 120  
Sample collection site Southern_Ocean  
Other collection site info LOHAFEX station 120  

Project id 104  
Collection start time 2009-01-28 00:00:00.0  
Collection stop time 2009-01-28 00:00:00.0  
Clonal 1  
Collection date 28-JAN-09  
Date of experiment 20-JUN-11  
External sample id T. nitzschioides CTR 1  
Investigation type EU  
Principle investigator Bank Beszteri  
Primary citation (Grunow) Mereschkowsky 1902: 78  

GenBank BioSample 2740296  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP015/MMETSP0156.fastq.tar  

Day portion of day night cycle in hours 16  
Light 35  
Experimental temperature 3  
Night portion of day night cycle in hours 8  

Library acc CAM_LIB_001194  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000246  
Combined assembly name Thalassionema-nitzschioides-L26_B  
Pcr amp No  

Source mat id (MMETSP0156) Thalassionema nitzschioides - Calanus simillimus faecal pellet  
Source mat id CAM_BM_002448  
Source mat id CAM_SMPL_002428  
Sample type eukaryotes  
Sample description Thalassionema nitzschioides L26-B  
Sample name MMETSP0156  
Taxon id 33649  
Sample material Calanus simillimus faecal pellet  

Strain L26-B  
Genus Thalassionema  
Species nitzschioides  
Family Thalassionemataceae  
Order Thalassionemales  
Superkingdom Eukaryota  
Class Fragilariophyceae  
Phylum Bacillariophyta  

N/A