Sample: MMETSP0132_2C


Sample Name MMETSP0132_2C 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Symbiodinium kawagutii CCMP2468 (combined sample which includes MMETSP0132_2, MMETSP0133_2, MMETSP0134_2 and MMETSP0135_2)

Sample Accession CAM_SMPL_002423
Assembly  
Combined Assembly Symbiodinium-kawagutii-CCMP2468
Taxon ID 104179

Ph 8.1  
Phosphate 36.2  
Nitrate 882  
Axenic No  
Trace elements 11.7  
Experimental salinity 31  
Environmental salinity 35  

Longhurst province NPSW  

Growth medium L1 amended seawater  

NCBI SRA SRS621396  

Habitat name marine habitat  
Habitat marine habitat  

Site name Pacific_Ocean  
Latitude 21.25  
Longitude 158  
Site description coral reef near Hawaii  
Country UNITED STATES  
Country US  
Sample collection site Pacific_Ocean  
Other collection site info coral reef near Hawaii  

Project id 104  
Clonal 1  
Date of experiment 15-APR-11  
External sample id SymkaSL1  
Investigation type EU  
Principle investigator Senjie Lin  
Primary citation Zhang, Bhattacharya and Lin 2007. J. Mol. Evol. 65: 463-474  
Other experimental metadata available submitted are total RNA  

GenBank BioSample 2740419  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP013/MMETSP0132.fastq.tar  

Day portion of day night cycle in hours 14  
Light 200  
Experimental temperature 30  
Night portion of day night cycle in hours 10  

Library acc CAM_LIB_001189  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000241  
Combined assembly name Symbiodinium-kawagutii-CCMP2468  
Pcr amp 1  

Source mat id (MMETSP0132) Symbiodinium kawagutii  
Source mat id CAM_BM_002433  
Source mat id CAM_SMPL_002423  
Sample type eukaryotes  
Sample description Symbiodinium kawagutii CCMP2468 (combined sample which includes MMETSP0132_2, MMETSP0133_2, MMETSP0134_2 and MMETSP0135_2)  
Sample name MMETSP0132_2C  
Taxon id 104179  

Strain CCMP2468  
Genus Symbiodinium  
Species kawagutii  
Family Symbiodiniaceae  
Order Suessiales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta  

N/A