Sample: MMETSP0141


Sample Name MMETSP0141 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Pseudo-nitzschia australis 10249 10 AB

Sample Accession CAM_SMPL_002419
Assembly  
Combined Assembly Pseudo_nitzschia-australis-10249_10_AB
Taxon ID 44445

Ph 8.2  
Phosphate 36.7  
Nitrate 4  
Silicate 6.1  
Iron 6560  
Axenic No  
Trace elements 2687  
Experimental salinity 33  
Environmental salinity 33  
Urea 30  

Growth medium 0.2u filtered Monterey Bay seawater with ES enrichments lacking N- source which is applied in experiment specific manner  
Modifications to growth medium Continuous culture with dilution rate set to 0.29/d, UREA as N source  

NCBI SRA SRS618965  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description coastal ocean bay, near small boat harbor  

Site name Pacific_Ocean  
Latitude 36.60369  
Longitude -121.88927  
Site description Monterey Commercial Wharf II, part of routine time series sampling for Pseudo-nitzschia  
Country UNITED STATES  
Country US  
Depth 5  
Sample collection site Pacific_Ocean  
Other collection site info Monterey Commercial Wharf II, part of routine time series sampling for Pseudo-nitzschia  

Project id 104  
Collection start time 2010-09-06 10:00:00.0  
Collection stop time 2010-09-06 10:00:00.0  
Clonal 1  
Collection date 06-SEP-10  
Date of experiment 04-AUG-11  
External sample id 10249 10AB_UREA  
Investigation type EU  
Principle investigator G Jason Smith  
Collection time 10:00 AM  
Other experimental metadata available Continuous culture with dilution rate set to 0.29/d  

GenBank BioSample 2740349  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP014/MMETSP0141.fastq.tar  

Pressure 1  
Day portion of day night cycle in hours 24  
Light 250  
Experimental temperature 15  
Environmental temperature 15  

Library acc CAM_LIB_001185  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000237  
Combined assembly name Pseudo_nitzschia-australis-10249_10_AB  
Pcr amp No  

Source mat id (MMETSP0141) Pseudo-nitzschia australis - Seawater  
Source mat id 2894  
Source mat id CAM_BM_002439  
Source mat id CAM_SMPL_002419  
Sample type eukaryotes  
Sample description Pseudo-nitzschia australis 10249 10 AB  
Sample name MMETSP0141  
Taxon id 44445  
Sample material Seawater  

Strain 10249 10 AB  
Genus Pseudo-nitzschia  
Species australis  
Family Bacillariaceae  
Superkingdom Eukaryota  
Class Bacillariophyceae  
Phylum Bacillariophyta