Sample: MMETSP0139


Sample Name MMETSP0139 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Pseudo-nitzschia australis 10249 10 AB

Sample Accession CAM_SMPL_002414
Assembly  
Combined Assembly Pseudo_nitzschia-australis-10249_10_AB
Taxon ID 44445

Ph 8.2  
Phosphate 36.7  
Nitrate 80  
Silicate 6.1  
Iron 6560  
Axenic No  
Trace elements 2687  
Experimental salinity 33  
Environmental salinity 33  

Growth medium 0.2u filtered Monterey Bay seawater with ES enrichments lacking N- source which is applied in experiment specific manner  
Modifications to growth medium Continuous culture with dilution rate set to 0.29/d, NO3 as N source  

NCBI SRA SRS618963  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description coastal ocean bay, near small boat harbor  

Site name Pacific_Ocean  
Latitude 36.60369  
Longitude -121.88927  
Site description Monterey Commercial Wharf II, part of routine time series sampling for Pseudo-nitzschia  
Country UNITED STATES  
Country US  
Depth 5  
Sample collection site Pacific_Ocean  
Other collection site info Monterey Commercial Wharf II, part of routine time series sampling for Pseudo-nitzschia  

Project id 104  
Collection start time 2010-09-06 10:00:00.0  
Collection stop time 2010-09-06 10:00:00.0  
Clonal 1  
Collection date 06-SEP-10  
Date of experiment 04-AUG-11  
External sample id 10249 10AB_NO3  
Investigation type EU  
Principle investigator G Jason Smith  
Collection time 10:00 AM  
Other experimental metadata available Continuous culture with dilution rate set to 0.29/d  

GenBank BioSample 2740347  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP013/MMETSP0139.fastq.tar  

Pressure 1  
Day portion of day night cycle in hours 24  
Light 250  
Experimental temperature 15  
Environmental temperature 15  

Library acc CAM_LIB_001180  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000232  
Combined assembly name Pseudo_nitzschia-australis-10249_10_AB  
Pcr amp No  

Source mat id (MMETSP0139) Pseudo-nitzschia australis - Seawater  
Source mat id 2889  
Source mat id CAM_BM_002434  
Source mat id CAM_SMPL_002414  
Sample type eukaryotes  
Sample description Pseudo-nitzschia australis 10249 10 AB  
Sample name MMETSP0139  
Taxon id 44445  
Sample material Seawater  

Strain 10249 10 AB  
Genus Pseudo-nitzschia  
Species australis  
Family Bacillariaceae  
Superkingdom Eukaryota  
Class Bacillariophyceae  
Phylum Bacillariophyta