Sample: MMETSP0119


Sample Name MMETSP0119 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Glenodinium foliaceum CCAP 1116/3

Sample Accession CAM_SMPL_002401
Assembly  
Combined Assembly Glenodinium-foliaceum-CCAP1116_3
Taxon ID 160619

Ph 8  
Phosphate 36.2  
Nitrate 882  
Axenic No  
Trace elements 23000  
Experimental salinity 21  

Growth medium F/2-Si amended sea water  
Modifications to growth medium 48 hours before harvest antibiotics were added to medium: 500 mg/L penicillin; 200 mg/L ampicillin; 100 mg/L streptomycin; 100 mg/L neomycin  

NCBI SRA SRS618956  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Other  
Habitat marine habitat  

Site name York River, Chesapeake Bay,  
Site description estuary, brakish water  
Country UNITED STATES  
Country US  
Sample collection site York River, Chesapeake Bay,  
Other collection site info estuary, brakish water  

Project id 104  
Collection start time 1980-01-01 00:00:00.0  
Collection stop time 1980-01-01 00:00:00.0  
Volume unit L  
Clonal No  
Collection date 01-JAN-80  
Date of experiment 26-FEB-11  
External sample id Glenodinium foliaceum Dark (Gf Dark)  
Investigation type EU  
Principle investigator Patrick Keeling  
Primary citation Figueroa RI, Bravo I, Fraga S, Garces E, Llaveria G (2009) The life history and cell cycle of Kryptoperidinium foliaceum, A dinoflagellate with two eukaryotic nuclei. Protist 160: 285–300.; Kempton, J. W., Wolny, J., Tengs, T. et al. 2002. Kryptoperidi  
Primary citation Figueroa RI, Bravo I, Fraga S, Garces E, Llaveria G (2009) The life history and cell cycle of Kryptoperidinium foliaceum, A dinoflagellate with two eukaryotic nuclei. Protist 160: 285–300.; Kempton, J. W., Wolny, J., Tengs, T. et al. 2002. Kryptoperidin  
Volume filtered 2  

GenBank BioSample 2740044  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP011/MMETSP0119.fastq.tar  

Experimental temperature 22  
Night portion of day night cycle in hours 48  

Library acc CAM_LIB_001167  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000219  
Combined assembly name Glenodinium-foliaceum-CCAP1116_3  
Pcr amp No  

Source mat id (MMETSP0119) Glenodinium foliaceum - Seawater  
Source mat id 2876  
Source mat id CAM_BM_002421  
Source mat id CAM_SMPL_002401  
Sample type eukaryotes  
Sample description Glenodinium foliaceum CCAP 1116/3  
Sample name MMETSP0119  
Sample volume 2  
Taxon id 160619  
Sample material Seawater  

Strain CCAP 1116/3  
Genus Glenodinium  
Species foliaceum  
Family Peridiniaceae  
Order Peridiniales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta