Sample: MMETSP0118


Sample Name MMETSP0118 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Glenodinium foliaceum CCAP 1116/3

Sample Accession CAM_SMPL_002398
Assembly  
Combined Assembly Glenodinium-foliaceum-CCAP1116_3
Taxon ID 160619

Ph 8  
Phosphate 36.2  
Nitrate 882  
Axenic No  
Trace elements 23000  
Experimental salinity 21  

Growth medium F/2-Si amended sea water  
Modifications to growth medium 48 hours before harvest antibiotics were added to medium: 500 mg/L penicillin; 200 mg/L ampicillin; 100 mg/L streptomycin; 100 mg/L neomycin  

NCBI SRA SRS619057  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Other  
Habitat marine habitat  

Site name York River, Chesapeake Bay,  
Latitude 37.23  
Longitude -76.38  
Site description estuary, brakish water  
Country UNITED STATES  
Country US  
Sample collection site York River, Chesapeake Bay,  
Other collection site info estuary, brakish water  

Project id 104  
Collection start time 1980-01-01 00:00:00.0  
Collection stop time 1980-01-01 00:00:00.0  
Volume unit L  
Clonal No  
Collection date 01-JAN-80  
Date of experiment 24-FEB-11  
External sample id Glenodinium foliaceum light (Gf Light)  
Investigation type EU  
Principle investigator Patrick Keeling  
Primary citation Figueroa RI, Bravo I, Fraga S, Garces E, Llaveria G (2009) The life history and cell cycle of Kryptoperidinium foliaceum, A dinoflagellate with two eukaryotic nuclei. Protist 160: 285–300.; Kempton, J. W., Wolny, J., Tengs, T. et al. 2002. Kryptoperidi  
Primary citation Figueroa RI, Bravo I, Fraga S, Garces E, Llaveria G (2009) The life history and cell cycle of Kryptoperidinium foliaceum, A dinoflagellate with two eukaryotic nuclei. Protist 160: 285–300.; Kempton, J. W., Wolny, J., Tengs, T. et al. 2002. Kryptoperidin  
Volume filtered 2  

GenBank BioSample 2740043  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP011/MMETSP0118.fastq.tar  

Day portion of day night cycle in hours 12  
Light 550  
Experimental temperature 22  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001164  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000216  
Combined assembly name Glenodinium-foliaceum-CCAP1116_3  
Pcr amp No  

Source mat id (MMETSP0118) Glenodinium foliaceum - Seawater  
Source mat id 2873  
Source mat id CAM_BM_002418  
Source mat id CAM_SMPL_002398  
Sample type eukaryotes  
Sample description Glenodinium foliaceum CCAP 1116/3  
Sample name MMETSP0118  
Sample volume 2  
Taxon id 160619  
Sample material Seawater  

Strain CCAP 1116/3  
Genus Glenodinium  
Species foliaceum  
Family Peridiniaceae  
Order Peridiniales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta