Sample: MMETSP0101


Sample Name MMETSP0101 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Pteridomonas danica PT

Sample Accession CAM_SMPL_002393
Assembly  
Combined Assembly Pteridomonas-danica-PT
Taxon ID 38822

Prey organism if applicable Unknown bacteria  

Ph 8  
Phosphate 18.15  
Nitrate 441.23  
Axenic No  
Trace elements 12.25  
Experimental salinity 34  

Growth medium f/4 amended seawater  

NCBI SRA SRS618842  

Project id 104  
Clonal 1  
Date of experiment 15-MAR-11  
External sample id PteridomonasNOSYN  
Investigation type EU  
Principle investigator Brian Palenik  
Primary citation Zwirglmaier, K; Spence, E; Zubkov, MV, et al. 2009. Differential grazing of two heterotrophic nanoflagellates on marine Synechococcus strains. Environmental Microbiology. Volume 11. Issue 7. Pages: 1767-1776  

GenBank BioSample 2740409  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP010/MMETSP0101.fastq.tar  

Day portion of day night cycle in hours 24  
Light 20  
Experimental temperature 20  

Library acc CAM_LIB_001159  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000211  
Combined assembly name Pteridomonas-danica-PT  
Pcr amp No  

Source mat id (MMETSP0101) Pteridomonas danica  
Source mat id CAM_BM_002413  
Source mat id CAM_SMPL_002393  
Sample type eukaryotes  
Sample description Pteridomonas danica PT  
Sample name MMETSP0101  
Taxon id 38822  

Strain PT  
Genus Pteridomonas  
Species danica  
Family Pedinellaceae  
Order Pedinellales  
Superkingdom Eukaryota  
Class Dictyochophyceae  
Phylum Ochrophyta