Sample: MMETSP0098


Sample Name MMETSP0098 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

NY0313808BC1

Sample Accession CAM_SMPL_002390
Assembly  
Combined Assembly Undescribed-sp-isolateNY0313808BC1
Taxon ID 96639

Ph 7.2  
Axenic 1  
Experimental salinity 35  

Longhurst province NWCS  

Growth medium Minimal Essential Medium with 10% fetal bovine serum  

NCBI SRA SRS619112  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  

Site name Atlantic_Ocean  
Latitude 40.49657  
Longitude -74.17591  
Site description Raritan Bay, New York  
Country UNITED STATES  
Country US  
Depth 10  
Sample collection site Atlantic_Ocean  
Other collection site info Raritan Bay, New York  

Project id 104  
Collection start time 2003-11-01 09:00:00.0  
Collection stop time 2003-11-01 09:00:00.0  
Clonal 1  
Collection date 01-NOV-03  
Date of experiment 01-APR-11  
External sample id QPX1  
Investigation type EU  
Principle investigator Bassem Allam  
Additional citations Perrigault M, Allam B. (2009). Cytotoxicity of Quahog Parasite Unknown (QPX) toward hard clam (Mercenaria mercenaria) haemocytes and interactions between different pathogen isolates and host strains. Parasitology 136: 1281-1289.Perrigault M, Buggé DM.,  
Additional citations Perrigault M, Allam B. (2009). Cytotoxicity of Quahog Parasite Unknown (QPX) toward hard clam (Mercenaria mercenaria) haemocytes and interactions between different pathogen isolates and host strains. Parasitology 136: 1281-1289.Perrigault M, Buggé DM., A  
Primary citation Qian H., Liu Q., Allam B., Collier J.L. (2007). Molecular genetic variation within and among isolates of QPX (Thraustochytridae), a parasite of the hard clam (Mercenaria mercenaria). Diseases of Aquatic Organisms 77: 159-168.  
Collection time 09:00 AM  
Other experimental metadata available Isolate grown in 25 cm2 culture flasks in ambient air  

GenBank BioSample 2740213  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP009/MMETSP0098.fastq.tar  

Experimental temperature 23  

Library acc CAM_LIB_001156  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000208  
Combined assembly name Undescribed-sp-isolateNY0313808BC1  
Pcr amp No  

Source mat id (MMETSP0098) - Clam tissue  
Source mat id 2865  
Source mat id CAM_BM_002410  
Source mat id CAM_SMPL_002390  
Sample type eukaryotes  
Sample description NY0313808BC1  
Sample name MMETSP0098  
Taxon id 96639  
Sample material Clam tissue  

Strain NY0313808BC1  
Family Unknown  
Order Labyrinthulomycetes  
Superkingdom Eukaryota  
Class Unknown  
Phylum Unknown  

N/A