Sample: MMETSP0106


Sample Name MMETSP0106 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Acanthoeca-like sp. 10tr

Sample Accession CAM_SMPL_002388
Assembly  
Combined Assembly Acanthoeca_like-sp-10tr
Taxon ID 81532

Prey organism if applicable Synechococcus CC9311  

Ph 8  
Phosphate 18.15  
Nitrate 441.23  
Axenic No  
Trace elements 12.25  
Experimental salinity 34  

Growth medium f/4 amended seawater  

NCBI SRA SRS618960  

Project id 104  
Clonal 1  
Date of experiment 15-MAR-11  
External sample id AcanthoecalikeWITHSYN  
Investigation type EU  
Principle investigator Brian Palenik  
Additional citations Behnke,A., Barger,K.J., Bunge,J. and Stoeck,T. (2010)Spatio-temporal variations in protistan communities along an O/HS gradient in the anoxic Framvaren Fjord (Norway) FEMS Microbiol. Ecol. 72 (1), 89-102.  
Primary citation Carr,M., Leadbeater,B.S., Hassan,R., Nelson,M. and Baldauf,S.L. (2008)Molecular phylogeny of choanoflagellates, the sister group to MetazoaProc. Natl. Acad. Sci. U.S.A. 105 (43), 16641-16646  

GenBank BioSample 2740414  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP010/MMETSP0106.fastq.tar  

Day portion of day night cycle in hours 24  
Light 20  
Experimental temperature 20  

Library acc CAM_LIB_001154  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000206  
Combined assembly name Acanthoeca_like-sp-10tr  
Pcr amp No  

Source mat id (MMETSP0106) Acanthoeca-like sp.  
Source mat id CAM_BM_002408  
Source mat id CAM_SMPL_002388  
Sample type eukaryotes  
Sample description Acanthoeca-like sp. 10tr  
Sample name MMETSP0106  
Taxon id 81532  

Strain 10tr  
Genus Acanthoeca-like  
Species sp.  
Family Acanthoecidae  
Order Choanoflagellida  
Superkingdom Eukaryota  
Class Zoomastigophora  
Phylum Sarcomastigophora  

N/A