Sample: MMETSP0108


Sample Name MMETSP0108 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Goniomonas pacifica CCMP1869

Sample Accession CAM_SMPL_002386
Assembly  
Combined Assembly Goniomonas-pacifica-CCMP1869
Taxon ID 195067

Prey organism if applicable Synechococcus CC9311  

Ph 8  
Phosphate 18.15  
Nitrate 441.23  
Axenic No  
Trace elements 12.25  
Experimental salinity 34  

Growth medium f/4 amended seawater  

NCBI SRA SRS618840  

Project id 104  
Clonal 1  
Date of experiment 15-MAR-11  
External sample id GoniomonasWITHSYN  
Investigation type EU  
Principle investigator Brian Palenik  
Additional citations Martin-Cereceda M, Roberts EC, Wootton EC, Bonaccorso E, Dyal P, Guinea A, Rogers D, Wright CJ, Novarino G. (2010) Morphology, ultrastructure, and small subunit rDNA phylogeny of the marine heterotrophic flagellate Goniomonas aff. amphinema.J Eukaryot Mi  
Additional citations Martin-Cereceda M, Roberts EC, Wootton EC, Bonaccorso E, Dyal P, Guinea A, Rogers D, Wright CJ, Novarino G. (2010) Morphology, ultrastructure, and small subunit rDNA phylogeny of the marine heterotrophic flagellate Goniomonas aff. amphinema.J Eukaryot Mic  
Primary citation Deane,J.A., Strachan,I.M., Saunders,G.W., Hill,D.R.A. and McFadden,G.I. (2002) Cryptomonad evolution: nuclear 18S rDNA phylogeny versus cell morphology and pigmentation J. Phycol. 38 (6), 1236-1244.  

GenBank BioSample 2740416  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP010/MMETSP0108.fastq.tar  

Day portion of day night cycle in hours 24  
Light 20  
Experimental temperature 20  

Library acc CAM_LIB_001152  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000204  
Combined assembly name Goniomonas-pacifica-CCMP1869  
Pcr amp No  

Source mat id (MMETSP0108) Goniomonas Pacifica  
Source mat id CAM_BM_002406  
Source mat id CAM_SMPL_002386  
Sample type eukaryotes  
Sample description Goniomonas pacifica CCMP1869  
Sample name MMETSP0108  
Taxon id 195067  

Strain CCMP1869  
Genus Goniomonas  
Species Pacifica  
Family Goniomonodaceae  
Order Cryptomonadales  
Superkingdom Eukaryota  
Class Cryptophyceae  
Phylum Cryptophyta