Sample: MMETSP0104


Sample Name MMETSP0104 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Paraphysomonas imperforata PA2

Sample Accession CAM_SMPL_002384
Assembly  
Combined Assembly Paraphysomonas-imperforata-PA2
Taxon ID 37642

Prey organism if applicable Synechococcus CC9311  

Ph 8  
Phosphate 18.15  
Nitrate 441.23  
Axenic No  
Trace elements 12.25  
Experimental salinity 34  

Growth medium f/4 amended seawater  

NCBI SRA SRS618845  

Project id 104  
Clonal 1  
Date of experiment 16-MAY-11  
External sample id ParaphysomonasWITHSYN  
Investigation type EU  
Principle investigator Brian Palenik  
Additional citations EL Lim, Mark R. Dennett, David A. Caron (1999)The Ecology of Paraphysomonas imperforata Based on Studies Employing Oligonucleotide Probe Identification in Coastal Water Samples and Enrichment CulturesLimnology and Oceanography Vol. 44: 37-51.  
Primary citation Caron DA, Lim EL, Dennett MR, Gast RJ, Kosman C, DeLong EF (1999)Molecular phylogenetic analysis of the heterotrophic chrysophyte genus Paraphysomonas (Chrysophyceae), and the design of rRNA-targeted oligonucleotide probes for two species. J. Phycol. 35  
Primary citation Caron DA, Lim EL, Dennett MR, Gast RJ, Kosman C, DeLong EF (1999)Molecular phylogenetic analysis of the heterotrophic chrysophyte genus Paraphysomonas (Chrysophyceae), and the design of rRNA-targeted oligonucleotide probes for two species. J. Phycol. 35 (  

GenBank BioSample 2740412  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP010/MMETSP0104.fastq.tar  

Day portion of day night cycle in hours 24  
Light 20  
Experimental temperature 20  

Library acc CAM_LIB_001150  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000202  
Combined assembly name Paraphysomonas-imperforata-PA2  
Pcr amp No  

Source mat id (MMETSP0104) Paraphysomonas Imperforata  
Source mat id CAM_BM_002404  
Source mat id CAM_SMPL_002384  
Sample type eukaryotes  
Sample description Paraphysomonas imperforata PA2  
Sample name MMETSP0104  
Taxon id 37642  

Strain PA2  
Genus Paraphysomonas  
Species Imperforata  
Family Synuraceae  
Order Chromulinales  
Superkingdom Eukaryota  
Class Chrysophyceae  
Phylum Ochrophyta