Sample: MMETSP0031


Sample Name MMETSP0031 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Karenia brevis CCMP2229

Sample Accession CAM_SMPL_002359
Assembly  
Combined Assembly Karenia-brevis-CCMP2229
Taxon ID 156230

Prey organism if applicable none  

Ph 8.2  
Phosphate 60  
Nitrate 60  
Axenic No  
Trace elements 1170  
Experimental salinity 32  

Growth medium L1  
Modifications to growth medium none  

NCBI SRA SRS619068  

Habitat name marine habitat  
Habitat marine habitat  
Habitat description coastal  

Latitude 27.0171  
Longitude -82.47  
Longitude 82.4763  

Project id 104  
Clonal 1  
Date of experiment 01-AUG-07  
External sample id K. brevis L1 - HL  
Investigation type EU  
Principle investigator Geoff Sinclair, Boris Wawrik  
Other experimental metadata available Isolated from near Manasota Florida at station VS05  

GenBank BioSample 2740385  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP003/MMETSP0031.fastq.tar  

Day portion of day night cycle in hours 12  
Light 600  
Experimental temperature 22  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001125  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000177  
Combined assembly name Karenia-brevis-CCMP2229  
Pcr amp No  

Source mat id (MMETSP0031) Karenia brevis  
Source mat id CAM_BM_002379  
Source mat id CAM_SMPL_002359  
Sample type eukaryotes  
Sample description Karenia brevis CCMP2229  
Sample name MMETSP0031  
Taxon id 156230  

Strain CCMP2229  
Genus Karenia  
Species brevis  
Family Gymnodiniaceae  
Order Gymnodiniales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta