Sample: MMETSP0004


Sample Name MMETSP0004 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Ochromonas sp. CCMP1393

Sample Accession CAM_SMPL_002331
Assembly  
Combined Assembly Ochromonas-sp-CCMP1393
Taxon ID 420556

Ph 8  
Axenic No  
Experimental salinity 35  
Environmental salinity 35  

Longhurst province NWCS  

Growth medium marine media K  
Modifications to growth medium plus soil exract  
Other environmental metadata available cells are 4-6 um in length and width  

NCBI SRA SRS618979  

Habitat name marine habitat  
Habitat marine habitat  

Site name Atlantic_Ocean  
Latitude 38.702  
Longitude -72.3667  
Site description Oceanus cruise 83 Sta II  
Country UNITED STATES  
Country US  
Depth 22.5  
Sample collection site Atlantic_Ocean  
Other collection site info Oceanus cruise 83 Sta II  

Project id 104  
Collection start time 1980-07-11 00:00:00.0  
Collection stop time 1980-07-11 00:00:00.0  
Clonal Unknown  
Collection date 11-JUL-80  
Date of experiment 16-NOV-11  
External sample id OchroLight  
Investigation type EU  
Principle investigator David Caron  
Primary citation https://ccmp.bigelow.org/node/1/strain/CCMP1393  
Other experimental metadata available Chlorophyll - 97.3 ug/L  

GenBank BioSample 2740048  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP000/MMETSP0004.fastq.tar  

Day portion of day night cycle in hours 12  
Light 150  
Experimental temperature 18  
Night portion of day night cycle in hours 12  
Environmental temperature 20.5  

Library acc CAM_LIB_001097  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000149  
Combined assembly name Ochromonas-sp-CCMP1393  
Pcr amp No  

Source mat id (MMETSP0004) Ochromonas sp. - nylon rope  
Source mat id 2806  
Source mat id CAM_BM_002351  
Source mat id CAM_SMPL_002331  
Sample type eukaryotes  
Sample description Ochromonas sp. CCMP1393  
Sample name MMETSP0004  
Taxon id 420556  
Sample material nylon rope  

Strain CCMP1393  
Genus Ochromonas  
Species sp.  
Family Ochromonadaceae  
Order Chromulinales  
Superkingdom Eukaryota  
Class Synurophyceae  
Phylum Ochrophyta