Project Name Host-microbe interactions in an Atriplex microbiome 
Domain (1) bacteria
Investigators (1)
Institution USDA-ARS Jornada Experimental Range
Project Code CAM_PROJ_AtriplexMicrobiome
Project Type metagenome
Publications (1)


1) Conduct phylogeographic analysis of seedborne endophytes associated with Atriplex canescens and related species 2) Explore endophyte interactions with host plants by modifying endophyte consortia in Atriplex and documenting changes to host phenotypes and associated microbial communities 3) Explore endophyte interactions with a non-native host plant (Bouteloua eriopoda) by transferring Atriplex endophytes to Bouteloua eriopoda and documenting subsequent changes to Bouteloua eriopoda phenotypes and associated Bouteloua eriopoda microbial communities 4) Explore endophyte persistence in non-native host plants by transferring Atriplex endophytes to novel hosts and documenting subsequent changes to non-native host phenotypes and associated endophyte communities


No assemblies.


Sample Name PI Desc
ATRIPLEXMICROBIOME_SMPL_ATCA-J_16S NA ATCA-J 16S
ATRIPLEXMICROBIOME_SMPL_ATCA-J_SSU NA ATCA-J SSU
ATRIPLEXMICROBIOME_SMPL_ATGR_16S NA ATGR 16S
ATRIPLEXMICROBIOME_SMPL_ATGR_SSU NA ATGR SSU
ATRIPLEXMICROBIOME_SMPL_BOER-NOHAL_16S NA BOER-Nohal 16S
ATRIPLEXMICROBIOME_SMPL_BOER-NOHAL_SSU NA BOER-Nohal SSU
ATRIPLEXMICROBIOME_SMPL_T506_16S NA T506 BOERN_ATCAJ 16S
ATRIPLEXMICROBIOME_SMPL_T506_SSU NA T506 BOERN_ATCAJ SSU
ATRIPLEXMICROBIOME_SMPL_T507_16S NA T507 BOERN_ATCAJ-callus 16S
ATRIPLEXMICROBIOME_SMPL_T507_SSU NA T507 BOERN_ATCAJ-callus SSU
ATRIPLEXMICROBIOME_SMPL_T508_16S NA T508 BOERN_Control 16S
ATRIPLEXMICROBIOME_SMPL_T508_SSU NA T508 BOERN_Control SSU
ATRIPLEXMICROBIOME_SMPL_T509_16S NA T509 BOER_OM 16S
ATRIPLEXMICROBIOME_SMPL_T509_SSU NA T509 BOER_OM SSU
ATRIPLEXMICROBIOME_SMPL_T510_16S NA T510 BOERN-OM 16S
ATRIPLEXMICROBIOME_SMPL_T510_SSU NA T510 BOERN-OM SSU
ATRIPLEXMICROBIOME_SMPL_T512_16S NA T512 ATCA-J seeds 16S
ATRIPLEXMICROBIOME_SMPL_T512_SSU NA T512 ATCA-J seeds SSU
ATRIPLEXMICROBIOME_SMPL_T513_16S NA T513-BOER-Nogal 16S
ATRIPLEXMICROBIOME_SMPL_T513_SSU NA T513-BOER-Nogal SSU
ATRIPLEXMICROBIOME_SMPL_T521_16S NA T521 ATCAJ 16S
ATRIPLEXMICROBIOME_SMPL_T521_SSU NA T521 ATCAJ SSU
ATRIPLEXMICROBIOME_SMPL_T523_16S NA T523 BOER-OM 16S
ATRIPLEXMICROBIOME_SMPL_T523_SSU NA T523 BOER-OM SSU
ATRIPLEXMICROBIOME_SMPL_T524-EndoITSFR NA T524 ATCA-J EndoITSFR
ATRIPLEXMICROBIOME_SMPL_T524-NLB4 NA T524 ATCA-J NLB4
ATRIPLEXMICROBIOME_SMPL_T524_16S NA T524 ATCA-J 16S
ATRIPLEXMICROBIOME_SMPL_T524_SSU NA T524 ATCA-SSU


Type Location
Meta  /iplant/home/shared/imicrobe/projects/5/CAM_PROJ_AtriplexMicrobiome.csv
Meta  /iplant/home/shared/imicrobe/projects/5/sample-attr.tab
Reads  /iplant/home/shared/imicrobe/projects/5/CAM_PROJ_AtriplexMicrobiome.read.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/206/ATRIPLEXMICROBIOME_SMPL_ATCA-J_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/207/ATRIPLEXMICROBIOME_SMPL_ATCA-J_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/208/ATRIPLEXMICROBIOME_SMPL_ATGR_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/209/ATRIPLEXMICROBIOME_SMPL_ATGR_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/210/ATRIPLEXMICROBIOME_SMPL_BOER-NOHAL_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/211/ATRIPLEXMICROBIOME_SMPL_BOER-NOHAL_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/212/ATRIPLEXMICROBIOME_SMPL_T506_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/213/ATRIPLEXMICROBIOME_SMPL_T506_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/214/ATRIPLEXMICROBIOME_SMPL_T507_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/215/ATRIPLEXMICROBIOME_SMPL_T507_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/216/ATRIPLEXMICROBIOME_SMPL_T508_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/217/ATRIPLEXMICROBIOME_SMPL_T508_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/218/ATRIPLEXMICROBIOME_SMPL_T509_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/219/ATRIPLEXMICROBIOME_SMPL_T509_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/220/ATRIPLEXMICROBIOME_SMPL_T510_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/221/ATRIPLEXMICROBIOME_SMPL_T510_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/222/ATRIPLEXMICROBIOME_SMPL_T512_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/223/ATRIPLEXMICROBIOME_SMPL_T512_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/224/ATRIPLEXMICROBIOME_SMPL_T513_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/225/ATRIPLEXMICROBIOME_SMPL_T513_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/226/ATRIPLEXMICROBIOME_SMPL_T521_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/227/ATRIPLEXMICROBIOME_SMPL_T521_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/228/ATRIPLEXMICROBIOME_SMPL_T523_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/229/ATRIPLEXMICROBIOME_SMPL_T523_SSU.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/230/ATRIPLEXMICROBIOME_SMPL_T524-EndoITSFR.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/231/ATRIPLEXMICROBIOME_SMPL_T524-NLB4.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/232/ATRIPLEXMICROBIOME_SMPL_T524_16S.fa
Reads  /iplant/home/shared/imicrobe/projects/5/samples/233/ATRIPLEXMICROBIOME_SMPL_T524_SSU.fa