Project Name The gut DNA viromes of Malawian twins discordant for severe acute undernutrition 
Domain (1) viruses
Investigators (0) N/A
Institution WASHINGTON UNIVERSITY IN SAINT LOUIS
Project Code PRJEB9818
Project Type metagenome


The bacterial component of the human gut microbiota undergoes a definable program of postnatal development. Evidence is accumulating that this program is disrupted in children with severe acute malnutrition (SAM) and that their persistent gut microbiota immaturity, which is not durably repaired with current ready-to-use therapeutic food (RUTF) interventions, is causally related to disease pathogenesis. To further characterize gut microbial community development in healthy versus malnourished infants/children, we performed a time-series metagenomic study of DNA isolated from virus-like particles (VLPs) recovered from fecal samples collected during the first 30 months of postnatal life from eight pairs of mono- and dizygotic Malawian twins concordant for healthy growth, and 12 twin pairs discordant for SAM (either marasmus or kwashiorkor). Both members of discordant pairs were sampled just prior to, during and after treatment with a peanut-based RUTF. Using Random Forests and a dataset of 17,676 viral contigs assembled from shotgun sequencing reads of VLP DNAs, we identified viruses that distinguish different assembly stages of the gut microbiota in the concordant healthy twin pairs. This normal developmental program was impaired in both members of SAM discordant pairs and not repaired with RUTF. Phage plus viruses belonging to the Anelloviridae and Circoviridae families of single-stranded eukaryotic viruses discriminate discordant pairs from concordant healthy pairs. These results disclose that apparently healthy co-twins in discordant pairs have viromes indicative of familial risk for SAM and provide a human model for delineating normal versus perturbed postnatal acquisition and retention of the gut microbiota’s viral component in populations at risk for malnutrition.


No assemblies.


Sample Name PI Desc
F56T1_3d NA
F56T2_3d NA
F56T2_R3d NA
F56T2_S7d NA
F57T1_1_2 NA
F57T1_3_4 NA
F57T1_CecA2 NA
F57T2_6 NA
F57T2_8_9 NA
F57T2_Cec_B7 NA
Ma_F10M_19.8.08 NA
Ma_F10T1_11.11.08 NA
Ma_F10T1_28.4.09 NA
Ma_F10T1_3.2.09 NA
Ma_F10T2_11.11.08 NA
Ma_F10T2_19.8.08 NA
Ma_F10T2_3.2.09 NA
Ma_F112T1_10.4.09 NA
Ma_F112T1_13.2.09 NA
Ma_F112T1_13.3.09 NA
Ma_F112T1_2.1.09 NA
Ma_F112T1_23.1.09 NA
Ma_F112T1_26.9.08 NA
Ma_F112T1_30.1.09 NA
Ma_F112T2_10.4.09 NA
Ma_F112T2_13.2.09 NA
Ma_F112T2_13.3.09 NA
Ma_F112T2_16.1.09 NA
Ma_F112T2_2.1.09 NA
Ma_F112T2_26.9.08 NA
Ma_F112T2_30.1.09 NA
Ma_F121S_14.10.08 NA
Ma_F121T1_1.12.09 NA
Ma_F121T1_14.10.08 NA
Ma_F121T1_23.2.10 NA
Ma_F121T1_30.06.09 NA
Ma_F121T1_31.03.09 NA
Ma_F121T1_6.1.09 NA
Ma_F121T2_1.12.09 NA
Ma_F121T2_14.10.08 NA
Ma_F121T2_23.2.10 NA
Ma_F121T2_23.6.09 NA
Ma_F121T2_31.03.09 NA
Ma_F121T2_6.1.09 NA
Ma_F138T1_15.5.09 NA
Ma_F138T1_17.4.09 NA
Ma_F138T1_19.6.09 NA
Ma_F138T1_20.3.09 NA
Ma_F138T1_3.4.09 NA
Ma_F138T1_30.1.09 NA
Ma_F138T2_12.6.09 NA
Ma_F138T2_15.5.09 NA
Ma_F138T2_17.4.09 NA
Ma_F138T2_20.3.09 NA
Ma_F138T2_3.4.9 NA
Ma_F138T2_30.1.09 NA
Ma_F194T1_13.1.09 NA
Ma_F194T1_16.12.08 NA
Ma_F194T1_24.2.09 NA
Ma_F194T1_27.1.09 NA
Ma_F194T1_28.4.09 NA
Ma_F194T1_31.3.09 NA
Ma_F194T2_13.1.09 NA
Ma_F194T2_16.12.08 NA
Ma_F194T2_27.1.09 NA
Ma_F194T2_28.4.09 NA
Ma_F194T2_31.3.09 NA
Ma_F196M_18.11.09 NA
Ma_F196T1_10.2.10 NA
Ma_F196T1_11.2.09 NA
Ma_F196T1_17.2.10 NA
Ma_F196T1_18.11.09 NA
Ma_F196T1_3.3.10 NA
Ma_F196T1_31.3.10 NA
Ma_F196T2_10.2.10 NA
Ma_F196T2_17.2.10 NA
Ma_F196T2_18.11.09 NA
Ma_F196T2_3.3.10 NA
Ma_F196T2_31.3.10 NA
Ma_F209M_30.12.08 NA
Ma_F209T1_15.12.09 NA
Ma_F209T1_25.08.09 NA
Ma_F209T1_30.06.09 NA
Ma_F209T1_30.12.08 NA
Ma_F209T2_15.12.09 NA
Ma_F209T2_24.2.09 NA
Ma_F209T2_25.8.09 NA
Ma_F209T2_30.12.08 NA
Ma_F209T2_30.6.09 NA
Ma_F229T1_10.4.09 NA
Ma_F229T1_13.2.09 NA
Ma_F229T1_13.3.09 NA
Ma_F229T1_16.1.09 NA
Ma_F229T1_27.2.09 NA
Ma_F229T1_30.1.09 NA
Ma_F229T2_10.4.09 NA
Ma_F229T2_13.2.09 NA
Ma_F229T2_13.3.09 NA
Ma_F229T2_16.1.09 NA
Ma_F229T2_27.2.09 NA
Ma_F229T2_30.1.09 NA
Ma_F23T1_17.11.08 NA
Ma_F23T1_21.9.08 NA
Ma_F23T1_25.08.08 NA
Ma_F23T1_3.11.08 NA
Ma_F23T1_6.10.08 NA
Ma_F23T1_8.9.08 NA
Ma_F23T2_17.11.08 NA
Ma_F23T2_22.9.8 NA
Ma_F23T2_25.08.08 NA
Ma_F23T2_3.11.08 NA
Ma_F23T2_6.10.08 NA
Ma_F23T2_8.9.08 NA
Ma_F259T1_1.12.09 NA
Ma_F259T1_16.6.09 NA
Ma_F259T1_21.4.09 NA
Ma_F259T1_26.1.10 NA
Ma_F259T2_1.12.09 NA
Ma_F259T2_11.8.09 NA
Ma_F259T2_16.6.09 NA
Ma_F259T2_26.1.10 NA
Ma_F268T1_12.8.09 NA
Ma_F268T1_24.6.09 NA
Ma_F268T1_26.8.09 NA
Ma_F268T1_4.11.09 NA
Ma_F268T1_7.10.09 NA
Ma_F268T1_9.9.09 NA
Ma_F268T2_12.8.09 NA
Ma_F268T2_24.6.09 NA
Ma_F268T2_26.8.09 NA
Ma_F268T2_4.11.09 NA
Ma_F268T2_7.10.09 NA
Ma_F268T2_9.9.09 NA
Ma_F26T1_15.12.08 NA
Ma_F26T1_17.11.08 NA
Ma_F26T1_20.10.08 NA
Ma_F26T1_22.9.08 NA
Ma_F26T1_25.8.08 NA
Ma_F26T1_6.10.08 NA
Ma_F26T2_15.12.08 NA
Ma_F26T2_17.11.08 NA
Ma_F26T2_20.10.08 NA
Ma_F26T2_22.9.08 NA
Ma_F26T2_25.8.08 NA
Ma_F26T2_6.10.08 NA
Ma_F284M_28.9.09 NA
Ma_F284T1_15.3.10 NA
Ma_F284T1_15.3.10R NA
Ma_F284T1_15.3.10R1 NA
Ma_F284T1_18.1.10 NA
Ma_F284T2_15.2.10 NA
Ma_F284T2_15.3.10 NA
Ma_F284T2_18.1.10 NA
Ma_F284T2_25.5.09 NA
Ma_F284T2_4.1.10 NA
Ma_F301M_22.4.09 NA
Ma_F301T1_12.8.09 NA
Ma_F301T1_2.12.09 NA
Ma_F301T1_22.4.09 NA
Ma_F301T1_27.1.10 NA
Ma_F301T1_31.3.10 NA
Ma_F301T1_7.10.09 NA
Ma_F301T2_12.8.09 NA
Ma_F301T2_17.6.09 NA
Ma_F301T2_2.12.09 NA
Ma_F301T2_31.3.10 NA
Ma_F301T2_7.10.09 NA
Ma_F37M_4.11.08 NA
Ma_F37S_23.9.08 NA
Ma_F37T1_12.12.08 NA
Ma_F37T1_24.2.09 NA
Ma_F37T1_26.5.09 NA
Ma_F37T1_26.8.08 NA
Ma_F37T2_12.12.08 NA
Ma_F37T2_26.5.09 NA
Ma_F37T2_26.8.08 NA
Ma_F47T1_06.05.09 NA
Ma_F47T1_11.02.09 NA
Ma_F47T1_13.01.10 NA
Ma_F47T1_19.11.08 NA
Ma_F47T1_27.08.08 NA
Ma_F47T1_29.07.09 NA
Ma_F47T2_06.05.09 NA
Ma_F47T2_11.02.09 NA
Ma_F47T2_13.01.10 NA
Ma_F47T2_19.11.08 NA
Ma_F47T2_27.08.08 NA
Ma_F47T2_29.07.09 NA
Ma_F56M_30.9.08 NA
Ma_F56S_30.9.08 NA
Ma_F56T1_14.10.08 NA
Ma_F56T1_17.3.09 NA
Ma_F56T1_2.9.08 NA
Ma_F56T1_23.12.08 NA
Ma_F56T1_25.11.08 NA
Ma_F56T1_28.10.08 NA
Ma_F56T1_30.9.08 NA
Ma_F56T1_9.6.09 NA
Ma_F56T2_14.10.08 NA
Ma_F56T2_17.3.09 NA
Ma_F56T2_2.9.08 NA
Ma_F56T2_23.12.08 NA
Ma_F56T2_25.11.08 NA
Ma_F56T2_28.10.08 NA
Ma_F56T2_30.9.08 NA
Ma_F56T2_9.6.09 NA
Ma_F57M_30.9.08 NA
Ma_F57T1_14.10.08 NA
Ma_F57T1_14.10.08R NA
Ma_F57T1_17.3.09 NA
Ma_F57T1_2.9.08 NA
Ma_F57T1_2.9.08R NA
Ma_F57T1_23.12.08 NA
Ma_F57T1_25.11.08 NA
Ma_F57T1_28.10.08 NA
Ma_F57T1_30.9.08 NA
Ma_F57T1_9.6.09 NA
Ma_F57T2_14.10.08 NA
Ma_F57T2_17.3.09 NA
Ma_F57T2_2.9.08 NA
Ma_F57T2_23.12.08 NA
Ma_F57T2_25.11.08 NA
Ma_F57T2_25.11.08R NA
Ma_F57T2_28.10.08 NA
Ma_F57T2_28.10.08R NA
Ma_F57T2_30.9.08 NA
Ma_F57T2_9.6.09 NA
Ma_F93T1_12.12.08 NA
Ma_F93T1_14.11.08 NA
Ma_F93T1_17.10.08 NA
Ma_F93T1_19.9.08 NA
Ma_F93T1_3.10.08 NA
Ma_F93T2_12.12.08 NA
Ma_F93T2_14.11.08 NA
Ma_F93T2_17.10.08 NA
Ma_F93T2_19.9.08 NA
Ma_F93T2_3.10.08 NA
Ma_F95M_14.11.08 NA
Ma_F95S_17.10.08 NA
Ma_F95T1_19.9.08 NA
Ma_F95T1_5.12.08 NA
Ma_F95T1_5.6.09 NA
Ma_F95T1_6.3.09 NA
Ma_F95T2_19.9.08 NA
Ma_F95T2_5.12.08 NA
Ma_F95T2_5.6.09 NA
Ma_F95T2_6.3.09 NA


Type Location
Meta  /iplant/home/shared/imicrobe/projects/130/sample-attr.tab
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2761/ERR974990.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2741/ERR974991.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2742/ERR974992.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2743/ERR974993.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2744/ERR974994.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2745/ERR974995.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2746/ERR974996.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2747/ERR974997.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2748/ERR974998.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2749/ERR975000.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2756/ERR975013.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2750/ERR975002.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2752/ERR975005.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2751/ERR975003.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2754/ERR975008.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2753/ERR975006.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2755/ERR975009.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2864/ERR975174.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2862/ERR975172.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2863/ERR975173.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2859/ERR975169.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2860/ERR975170.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2858/ERR975168.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2861/ERR975171.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2871/ERR975182.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2869/ERR975180.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2870/ERR975181.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2867/ERR975178.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2866/ERR975177.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2865/ERR975176.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2868/ERR975179.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3161/ERR975203.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2876/ERR975190.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2872/ERR975183.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2877/ERR975191.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2875/ERR975189.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2874/ERR975187.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2873/ERR975185.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3159/ERR975199.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2878/ERR975192.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3160/ERR975201.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2881/ERR975198.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2880/ERR975197.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2879/ERR975196.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3166/ERR975208.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3165/ERR975207.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3167/ERR975209.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3163/ERR975205.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3164/ERR975206.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3162/ERR975204.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3173/ERR975215.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3172/ERR975214.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3171/ERR975213.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3169/ERR975211.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3170/ERR975212.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3168/ERR975210.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3175/ERR975217.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3174/ERR975216.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3177/ERR975219.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3176/ERR975218.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3179/ERR975221.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3178/ERR975220.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3181/ERR975224.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3180/ERR975222.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3182/ERR975226.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3184/ERR975228.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3183/ERR975227.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3196/ERR975242.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3187/ERR975232.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3185/ERR975229.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3188/ERR975233.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3186/ERR975230.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3189/ERR975234.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3190/ERR975235.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3192/ERR975238.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3193/ERR975239.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3191/ERR975237.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3194/ERR975240.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3195/ERR975241.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3205/ERR975251.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3200/ERR975246.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3199/ERR975245.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3198/ERR975244.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3197/ERR975243.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3204/ERR975250.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3203/ERR975249.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3201/ERR975247.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3202/ERR975248.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3211/ERR975261.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3208/ERR975257.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3210/ERR975260.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3206/ERR975255.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3209/ERR975259.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3207/ERR975256.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3216/ERR975267.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3213/ERR975263.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3215/ERR975265.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3212/ERR975262.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3214/ERR975264.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2763/ERR975025.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2759/ERR975021.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2757/ERR975019.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2762/ERR975024.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2760/ERR975022.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2758/ERR975020.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2769/ERR975036.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2766/ERR975030.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2764/ERR975027.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2768/ERR975034.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2767/ERR975032.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/2765/ERR975028.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3219/ERR975270.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3218/ERR975269.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3217/ERR975268.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3220/ERR975271.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3223/ERR975274.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3222/ERR975273.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3221/ERR975272.fasta
Reads  /iplant/home/shared/imicrobe/projects/130/samples/3224/ERR975275.fasta
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